# process raw reads, remove human contaminants, assemble, revise assembly and predict genes

# This code is part of the MOCAT analysis pipeline
# Code is (c) Copyright EMBL and BGI, 2012-2013
# This code is released under GNU GPL v3.

[command] -rtf
[command] -s hg19 -identity 90
[command] -a -r hg19
[command] -ar -r hg19
[command] -gp assembly.revised -r hg19
[command] -ss

